Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97014618_97048046_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

97014618 - 97048046

Intron Length:

33429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACTAAA

U12 Branch Point Sequence:

TTCTTTTTACAG

Flanking Amino Acid:

PSLQCMNSFQVAFLKM*

Intron Amino Acid Position:

389

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

59.8

0.24

1.2

61.9

33.9

Major PPT

91.6

0.93

0.6

86.9

23.9

Minor 5ss

32.6

-2

3.1

44.2

Minor BPS

-0.1

1.8

59.29

43.1

Associated Gene:

Gene:

UBE3D

Ensembl Gene ID:

ENSAPLG00000007088

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037599

97013494 - 97091602

78109

ENSAPLT00000033624

97013494 - 97091787

78294

ENSAPLT00000030665

97013494 - 97092008

78515