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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9703317_9705774_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9703317 - 9705774
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CGCCACTCACCC
Flanking Amino Acid:
GQQHMGIRAPGLQSMPGDYV
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
64.9
0.37
1
67
29.8
Major PPT
85.2
0.79
0.7
81
24.1
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
41.5
-0.6
1.9
45.77
42.4

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035691
9702110 - 9900105
197996
ENSAPLT00000018791
9702110 - 9806518
104409