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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97047128_97048046_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97047128 - 97048046
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
AATCTTATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGTTCAGTGAAA
Flanking Amino Acid:
PSLQCMNSFQNFGARRNLGR
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
77.3
0.62
0.9
70.8
38.8
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
46.4
-0.2
2.3
65.73
40.2

Associated Gene:

Gene:
UBE3D
Ensembl Gene ID:
ENSAPLG00000007088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007351
97046975 - 97091602
44628