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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9707156_9723990_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9707156 - 9723990
Intron Length:
16835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCGTAA
U12 Branch Point Sequence:
CCCTCCGTAACC
Flanking Amino Acid:
TGLTILQVNNWFINARRRIV
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
47.9
-0.1
1.4
45.6
39.5
Major PPT
88.5
0.86
0.8
84
31
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
56.9
0.2
2.1
65.58
46.5

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025473
9707147 - 9802719
95573
ENSAPLT00000018791
9702110 - 9806518
104409
ENSAPLT00000009586
9702317 - 9805674
103358
ENSAPLT00000043259
9702317 - 9806518
104202
ENSAPLT00000035691
9702110 - 9900105
197996