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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97080397_97084424_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97080397 - 97084424
Intron Length:
4028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
CTTTATCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCTTTATCC
Flanking Amino Acid:
HHASQNGSTLKSKENTRVFC
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
61.6
39.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.3
0.75
0.8
76.9
31.6
Minor 5ss
35.6
-1.6
3.4
42.7
46.8
Minor BPS
72.7
0.69
1.5
80.59
34.1

Associated Gene:

Gene:
UBE3D
Ensembl Gene ID:
ENSAPLG00000007088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030665
97013494 - 97092008
78515
ENSAPLT00000007351
97046975 - 97091602
44628
ENSAPLT00000045153
97066453 - 97091787
25335
ENSAPLT00000037599
97013494 - 97091602
78109
ENSAPLT00000033624
97013494 - 97091787
78294