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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97108050_97109624_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97108050 - 97109624
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CATGACCTAATT
Flanking Amino Acid:
GLEEGSEYYERTNTLLEKVA
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
89.9
0.9
0.7
85.2
29.1
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
48.2
-0
2
66.73
43.9

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033883
97104107 - 97155225
51119
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065