Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97110464_97111497_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

97110464 - 97111497

Intron Length:

1034

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTAACTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTGTTTCTAACT

Flanking Amino Acid:

LFCFPFHMSQATRPDMIRIL

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.9

90.9

28.7

Major BPS

100

1.24

0.5

100

Major PPT

82.1

0.72

0.8

79.2

32.9

Minor 5ss

40.3

-1.1

3.2

59.2

45.4

Minor BPS

66.5

0.6

1.6

83.86

37.3

Associated Gene:

Gene:

DOP1A

Ensembl Gene ID:

ENSAPLG00000007126

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033883

97104107 - 97155225

51119

ENSAPLT00000024497

97104107 - 97155225

51119

ENSAPLT00000007442

97104161 - 97155225

51065