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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97111598_97113986_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97111598 - 97113986
Intron Length:
2389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTCG
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATATTTATTT
Flanking Amino Acid:
LNRRLYAWLLGFDNNGALIG
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
63.3
43.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.9
0.49
1.1
71.9
38.4
Minor 5ss
38.7
-1.3
3
41.4
45
Minor BPS
49.6
0.05
1.7
65.44
39.1

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033883
97104107 - 97155225
51119
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065