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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97114097_97115942_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97114097 - 97115942
Intron Length:
1846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTCCTGTTATG
Flanking Amino Acid:
NTFSKEMLVQAMVGILQVNG
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
81.5
0.71
0.8
77.3
31.4
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
46.2
-0.4
2.3
60.32
42

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065
ENSAPLT00000033883
97104107 - 97155225
51119