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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97120384_97120814_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97120384 - 97120814
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTCCTCAATT
Flanking Amino Acid:
VDFLLDIVSLPTRSMRVLCQ
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72.9
0.52
1
74.1
34.1
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
75.5
0.88
1.5
88.16
37.4

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007442
97104161 - 97155225
51065