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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97120845_97121226_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97120845 - 97121226
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
ATATCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTGGTACAACT
Flanking Amino Acid:
PTRSMRVLCQETYIEIQTEH
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
75.3
0.57
0.9
67
39.6
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
45.9
-0.2
2.2
72.75
44.3

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007442
97104161 - 97155225
51065