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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97124749_97127218_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97124749 - 97127218
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTAAATG
Flanking Amino Acid:
SELHPGKPEVDCEQVQPPLW
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85
0.79
0.8
82.4
33.2
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
56.5
0.07
1.9
67.74
40.6

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065
ENSAPLT00000033883
97104107 - 97155225
51119