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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97127494_97128157_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97127494 - 97128157
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATGC
5'SS Class:
major
3'SS Sequence:
TTCACATCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTCTTGCAACT
Flanking Amino Acid:
YMAEKTDFFKHIALTLWDQL
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
60.4
39.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
60.5
0.24
1
59.9
34.7
Minor 5ss
36.6
-1.5
3.3
51
45.6
Minor BPS
46.6
-0.1
2.1
68.64
42.7

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033883
97104107 - 97155225
51119
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065