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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97132186_97132999_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97132186 - 97132999
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGAT
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAA
U12 Branch Point Sequence:
TCCTGTAGAATA
Flanking Amino Acid:
KSSSFGRTFDRSLFIMLDSL
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.5
37.5
Major BPS
54.8
0.12
1.2
52.7
43.2
Major PPT
82.1
0.72
0.8
80.8
31.3
Minor 5ss
29.3
-2.4
3.3
40.4
45.9
Minor BPS
42.8
-0.5
2
52.2
40.6

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065
ENSAPLT00000033883
97104107 - 97155225
51119