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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97139434_97140747_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97139434 - 97140747
Intron Length:
1314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTCTGTGATG
Flanking Amino Acid:
RQNKNTSRTKVIPAAGEEQL
Intron Amino Acid Position:
1855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
49.7
-0.1
2.1
61.34
41.8

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065
ENSAPLT00000033883
97104107 - 97155225
51119