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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97142061_97142753_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97142061 - 97142753
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
ATTTGCTTCATT
Flanking Amino Acid:
LPAPGQFLILGVLNEFIMKN
Intron Amino Acid Position:
1953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.9
38.6
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
34.7
-1.7
3.8
47.1
48.3
Minor BPS
58.7
0.35
2.2
81.92
40.2

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033883
97104107 - 97155225
51119
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065