About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97144541_97144805_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97144541 - 97144805
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTTCA
5'SS Class:
major
3'SS Sequence:
TATCTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAACTTTGAACT
Flanking Amino Acid:
DGNNVESDIEDMLSPAMETS
Intron Amino Acid Position:
2024

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
73.7
33.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76
0.59
0.9
74.8
34.8
Minor 5ss
40.6
-1.1
2.7
50.7
45.7
Minor BPS
58.7
0.35
1.4
72.34
37.9

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065
ENSAPLT00000033883
97104107 - 97155225
51119