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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97144886_97145449_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97144886 - 97145449
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACC
5'SS Class:
strong_major
3'SS Sequence:
TCACCTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ACTTCCTCACCT
Flanking Amino Acid:
SVHALTLLSEVLAHLLDMVF
Intron Amino Acid Position:
2051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
81.2
30.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
77.4
0.62
0.8
72.9
31.6
Minor 5ss
36.4
-1.5
2.8
46.5
41.8
Minor BPS
61
0.42
1.9
78.58
43.6

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033883
97104107 - 97155225
51119
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065