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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97145560_97145719_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97145560 - 97145719
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GACTTTTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACAATTTTAAAT
Flanking Amino Acid:
HYVVPYLRNHSAHNASSYRA
Intron Amino Acid Position:
2087

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.9
0.65
0.8
77.1
36.8
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
54.2
0.21
1.4
64.69
39.6

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065
ENSAPLT00000033883
97104107 - 97155225
51119