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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97149789_97150681_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97149789 - 97150681
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TACTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GGTACTTTATTT
Flanking Amino Acid:
QELTADEDISRTSGPSVAGL
Intron Amino Acid Position:
2273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.3
28.1
Major BPS
75.1
0.62
1
65.6
41
Major PPT
79.7
0.67
0.8
78.3
34.5
Minor 5ss
40.6
-1.1
2.8
52.6
44.6
Minor BPS
55.8
0.26
1.6
70.17
41

Associated Gene:

Gene:
DOP1A
Ensembl Gene ID:
ENSAPLG00000007126
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024497
97104107 - 97155225
51119
ENSAPLT00000007442
97104161 - 97155225
51065
ENSAPLT00000033883
97104107 - 97155225
51119