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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97160702_97162170_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97160702 - 97162170
Intron Length:
1469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCATCTCTAACT
Flanking Amino Acid:
FVKVHQKPPKGLDMKPNERC
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82
38.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
61.9
0.27
1
55
40.2
Minor 5ss
36.4
-1.5
3
51.7
44.8
Minor BPS
60
0.39
1.7
73.09
43.9

Associated Gene:

Gene:
PGM3
Ensembl Gene ID:
ENSAPLG00000007722
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008027
97156594 - 97164524
7931