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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97162668_97162963_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97162668 - 97162963
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
TGTTTTATGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTTTGAATA
Flanking Amino Acid:
GVSVLGGQYHDYGLVTTPQL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
68
39.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.7
0.53
1
74.7
40
Minor 5ss
46.1
-0.4
2.5
58
46.6
Minor BPS
65.4
0.48
1.3
72.78
32.9

Associated Gene:

Gene:
PGM3
Ensembl Gene ID:
ENSAPLG00000007722
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008027
97156594 - 97164524
7931