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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97169648_97173792_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97169648 - 97173792
Intron Length:
4145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGTAT
5'SS Class:
major
3'SS Sequence:
GCTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
GEDVFLTTAEVIAEQVSEEN
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
66.7
41.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.1
0.77
0.8
81.1
35.5
Minor 5ss
42.9
-0.8
3.5
64.2
47.3
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
ME1
Ensembl Gene ID:
ENSAPLG00000008240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030022
97168618 - 97311705
143088
ENSAPLT00000022938
97168618 - 97358688
190071
ENSAPLT00000008628
97168406 - 97365005
196600