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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97179071_97191169_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97179071 - 97191169
Intron Length:
12099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
TTCTCTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTTCTCTCACT
Flanking Amino Acid:
MVDSKGLIVKGRASLTAEKT
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.4
0.64
0.8
77.4
30.2
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
56.8
0.29
2.1
80.09
42.2

Associated Gene:

Gene:
ME1
Ensembl Gene ID:
ENSAPLG00000008240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030022
97168618 - 97311705
143088
ENSAPLT00000022938
97168618 - 97358688
190071
ENSAPLT00000008628
97168406 - 97365005
196600