About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97191284_97193030_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97191284 - 97193030
Intron Length:
1747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTGGTTTCATA
Flanking Amino Acid:
HTVLFQGAGEAALGIANLIV
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.3
34.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
43.1
-0.8
3.1
59
39.8
Minor BPS
45
-0.4
2.2
57.68
43.3

Associated Gene:

Gene:
ME1
Ensembl Gene ID:
ENSAPLG00000008240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008628
97168406 - 97365005
196600
ENSAPLT00000030022
97168618 - 97311705
143088
ENSAPLT00000022938
97168618 - 97358688
190071