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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97239097_97262960_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97239097 - 97262960
Intron Length:
23864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTTTTTAACA
Flanking Amino Acid:
VMLDVGTDNEALLKDPLYIG
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.7
0.78
0.9
81.5
34.3
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
81.8
1
0.9
85.09
27.2

Associated Gene:

Gene:
ME1
Ensembl Gene ID:
ENSAPLG00000008240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030022
97168618 - 97311705
143088
ENSAPLT00000022938
97168618 - 97358688
190071
ENSAPLT00000008628
97168406 - 97365005
196600