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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9724068_9751707_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9724068 - 9751707
Intron Length:
27640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TGGTGTCTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTGTTTTAAAT
Flanking Amino Acid:
MRAWLFQHLTHPYPSEEQKK
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.1
0.5
0.9
65.5
41.2
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
64.5
0.53
1.5
78.79
37.6

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018791
9702110 - 9806518
104409
ENSAPLT00000009586
9702317 - 9805674
103358
ENSAPLT00000043259
9702317 - 9806518
104202
ENSAPLT00000035691
9702110 - 9900105
197996