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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97263123_97265254_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97263123 - 97265254
Intron Length:
2132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTGCTTTTATTT
Flanking Amino Acid:
LKSWPESVIKAIVVTDGERI
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
50.3
0.09
1.5
65.14
40.2

Associated Gene:

Gene:
ME1
Ensembl Gene ID:
ENSAPLG00000008240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022938
97168618 - 97358688
190071
ENSAPLT00000008628
97168406 - 97365005
196600
ENSAPLT00000030022
97168618 - 97311705
143088