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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97287118_97293629_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97287118 - 97293629
Intron Length:
6512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATC
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
NFERLTSDLDRYILLMSLQD
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
81.4
30.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.4
0.57
0.9
69.4
36.3
Minor 5ss
37.4
-1.4
3.2
51.9
44.9
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
ME1
Ensembl Gene ID:
ENSAPLG00000008240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008628
97168406 - 97365005
196600
ENSAPLT00000030022
97168618 - 97311705
143088
ENSAPLT00000022938
97168618 - 97358688
190071