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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97293764_97341105_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97293764 - 97341105
Intron Length:
47342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
GTATTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATACTTATAT
Flanking Amino Acid:
EVLRDPHLNKGMAFTLEERQ
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80
0.68
0.9
74.2
40
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
58.5
0.34
1.9
79.66
41.6

Associated Gene:

Gene:
ME1
Ensembl Gene ID:
ENSAPLG00000008240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022938
97168618 - 97358688
190071
ENSAPLT00000008628
97168406 - 97365005
196600