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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97341319_97358658_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97341319 - 97358658
Intron Length:
17340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCTC
U12 Branch Point Sequence:
CCCTCCTTCTCT
Flanking Amino Acid:
MKAFHFKHLKDHPTPPGRHL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
33.6
-1
4.2
71.3
36.7
Major PPT
67.2
0.39
0.9
61
35.1
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
41.8
-0.5
3.6
66.83
49.8

Associated Gene:

Gene:
ME1
Ensembl Gene ID:
ENSAPLG00000008240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022938
97168618 - 97358688
190071