About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97401951_97404598_R


Intron Information:

Intron Rank:
23

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
97401951 - 97404598

Intron Length:
2648

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGGGTGTT

5'SS Class:
strong_major

3'SS Sequence:
TGGCATCTGTTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTGGCAT

U12 Branch Point Sequence:
CGTCTGGCATCT

Flanking Amino Acid:
FGAAAGPGVQLSPSPTPATQ

Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
84.2
0.81
0.9
81.3
32.8

Major BPS
49
-0
1.5
60.7
45.9

Major PPT
60
0.23
1
58.7
42.7

Minor 5ss
31.8
-2.1
3.6
48.2
47.9

Minor BPS
32.2
-1.2
2.5
49.46
44.1

Associated Gene:

Gene:
SNAP91

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

97401850 - 97468697
66848