About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97404704_97404777_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97404704 - 97404777
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTGCTTTAATT
Flanking Amino Acid:
VAQPGAAFGMPPAGAGVPMM
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.4
0.75
0.8
76.7
36.2
Minor 5ss
33.5
-1.9
3
41.5
39.2
Minor BPS
69.3
0.68
1.3
77.48
40

Associated Gene:

Gene:
SNAP91
Ensembl Gene ID:
ENSAPLG00000008991
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021218
97400765 - 97468697
67933
ENSAPLT00000009450
97401850 - 97468697
66848