About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97409265_97410607_R


Intron Information:

Intron Rank:
18

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
97409265 - 97410607

Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCA|GTAAGTGAC

5'SS Class:
major

3'SS Sequence:
TTATAACTTTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTTAT

U12 Branch Point Sequence:
TTTCTTATAACT

Flanking Amino Acid:
LDSSLANLVGNLGISGTTSK

Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.3
0.62
1
69.9
34.9

Major BPS
91.4
1.03
0.7
79.9
34.9

Major PPT
78.7
0.65
0.9
74.9
39.6

Minor 5ss
35.2
-1.7
3.3
49.1
41.3

Minor BPS
66.6
0.6
1.6
85.99
33.4

Associated Gene:

Gene:
SNAP91

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

97400765 - 97468697
67933

97401850 - 97468697
66848