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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97410758_97412040_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97410758 - 97412040
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TATTCTTTAACA
Flanking Amino Acid:
PTTGSSFDASVFDGLGDLLM
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
85.8
0.81
0.7
77.3
31.4
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
87
1.16
0.9
88.63
27.7

Associated Gene:

Gene:
SNAP91
Ensembl Gene ID:
ENSAPLG00000008991
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021218
97400765 - 97468697
67933
ENSAPLT00000009450
97401850 - 97468697
66848