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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97436828_97440139_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97436828 - 97440139
Intron Length:
3312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTGCTTTCAAG
Flanking Amino Acid:
DKGDIPDLTQAPSSLMETLE
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
70
0.5
1
67
39.8
Major PPT
73.8
0.54
1
71.4
38.6
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
50.1
-0.1
2
63.96
44.2

Associated Gene:

Gene:
SNAP91
Ensembl Gene ID:
ENSAPLG00000008991
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021218
97400765 - 97468697
67933
ENSAPLT00000009450
97401850 - 97468697
66848