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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97440182_97441474_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
97440182 - 97441474
Intron Length:
1293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TAAAAATCCACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CCTTTCTTAAAA
Flanking Amino Acid:
RVSEFLKVAEQVGIDKGDIP
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
60
0.22
1
51.1
42.1
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
69
0.59
1.4
71.75
40.6

Associated Gene:

Gene:
SNAP91
Ensembl Gene ID:
ENSAPLG00000008991
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021218
97400765 - 97468697
67933
ENSAPLT00000009450
97401850 - 97468697
66848