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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97443155_97444408_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97443155 - 97444408
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
ATTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTTGTAACT
Flanking Amino Acid:
EQIDALLEFDVHPNELTNGV
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.2
0.75
0.8
78.6
34.2
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
58.5
0.35
2.1
82.56
39.6

Associated Gene:

Gene:
SNAP91
Ensembl Gene ID:
ENSAPLG00000008991
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021218
97400765 - 97468697
67933
ENSAPLT00000009450
97401850 - 97468697
66848