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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97502549_97505143_R

Intron Information:

Intron Rank:
152912
Intron Class:
major
Intron Phase:
Intron Coordinates:
97502549 - 97505143
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
TGTACATTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
ATTTCTGTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
76.3
0.59
1
66.3
44.1
Minor 5ss
30.8
-2.2
3.5
39.2
46.1
Minor BPS
48.4
-0
2.3
75.14
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047321
97501622 - 97519568
17947