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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97504378_97505143_R

Intron Information:

Intron Rank:
152908
Intron Class:
major
Intron Phase:
Intron Coordinates:
97504378 - 97505143
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
TGTTTCTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
AAACCTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.5
0.71
0.9
77.1
37.1
Minor 5ss
30.8
-2.2
3.5
39.2
46.1
Minor BPS
45.3
-0.2
1.7
59.45
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017619
97502866 - 97508705
5840