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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97505222_97519056_R

Intron Information:

Intron Rank:
152913
Intron Class:
major
Intron Phase:
Intron Coordinates:
97505222 - 97519056
Intron Length:
13835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GATACTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GATACTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
84
0.85
0.9
75
39.9
Major PPT
68.3
0.41
1
62.2
42.9
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
72.4
0.7
1.2
74.42
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047321
97501622 - 97519568
17947