Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9751854_9780401_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9751854 - 9780401

Intron Length:

28548

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAAAG

5'SS Class:

strong_major

3'SS Sequence:

ACTATATTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

ATTTGATTCACT

Flanking Amino Acid:

SHSGDNSSEQGDGLDNSVAS

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.6

40.1

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

76.9

0.61

0.9

69.3

40.2

Minor 5ss

31.4

-2.1

3.1

46.4

Minor BPS

49.7

0.06

2.4

79.5

42.4

Associated Gene:

Gene:

MEIS1

Ensembl Gene ID:

ENSAPLG00000009141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018791

9702110 - 9806518

104409

ENSAPLT00000009586

9702317 - 9805674

103358

ENSAPLT00000043259

9702317 - 9806518

104202

ENSAPLT00000035691

9702110 - 9900105

197996