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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97527719_97527987_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
97527719 - 97527987
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
GTATGCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
77.6
0.62
0.9
74.5
39.5
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
54
0.2
2
73.48
43.5

Associated Gene:

Gene:
CYB5R4
Ensembl Gene ID:
ENSAPLG00000011840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012346
97527648 - 97562978
35331