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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97554508_97560773_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97554508 - 97560773
Intron Length:
6266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAAATTTTATTT
Flanking Amino Acid:
NFALTEVSCLRKVKLIFFNK
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
73.7
36.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.5
0.71
0.9
86.5
24.9
Minor 5ss
42.6
-0.8
2.5
52.7
44
Minor BPS
50.9
0.11
1.5
66.06
39

Associated Gene:

Gene:
CYB5R4
Ensembl Gene ID:
ENSAPLG00000011840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044096
97527988 - 97562978
34991
ENSAPLT00000012346
97527648 - 97562978
35331