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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97560861_97562237_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97560861 - 97562237
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTACA
5'SS Class:
major
3'SS Sequence:
TTCTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAAAT
Flanking Amino Acid:
QLEELALKDKRFEVQFVLSE
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.2
34
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85
0.79
0.8
76.7
37.5
Minor 5ss
42.2
-0.9
2.4
52.6
43.9
Minor BPS
67.1
0.62
1.5
83.04
37.3

Associated Gene:

Gene:
CYB5R4
Ensembl Gene ID:
ENSAPLG00000011840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044096
97527988 - 97562978
34991
ENSAPLT00000012346
97527648 - 97562978
35331