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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97562403_97562923_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97562403 - 97562923
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTGTGACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TACTTTGTGACT
Flanking Amino Acid:
GPTPFTEQGVECLRDLGYSQ
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
78.3
0.64
0.9
74.4
40.4
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
49.8
0.07
2
70.58
41.1

Associated Gene:

Gene:
CYB5R4
Ensembl Gene ID:
ENSAPLG00000011840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044096
97527988 - 97562978
34991
ENSAPLT00000012346
97527648 - 97562978
35331