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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97601603_97606830_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97601603 - 97606830
Intron Length:
5228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTTTTTCACCA
Flanking Amino Acid:
VSFEGLKAHKYSIVIGFWVG
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
83.2
0.75
0.8
78.1
35.1
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
51.8
0.05
1.8
66.33
40.9

Associated Gene:

Gene:
MRAP2
Ensembl Gene ID:
ENSAPLG00000011519
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011999
97600210 - 97611943
11734