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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97606931_97611533_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97606931 - 97611533
Intron Length:
4603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
TTATTTTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
LLTKTGAPHQDNAEPSEKRF
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1
61.4
39.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.7
0.67
0.8
74
36.5
Minor 5ss
30.3
-2.3
2.8
30.2
36.1
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
MRAP2
Ensembl Gene ID:
ENSAPLG00000011519
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011999
97600210 - 97611943
11734