Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97626412_97626513_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

97626412 - 97626513

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCCAAA

5'SS Class:

weak_major

3'SS Sequence:

TTTTGGAGAGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

TTCAGCTAAAAC

Flanking Amino Acid:

IREMEGILKRRIKKLEMELE

Intron Amino Acid Position:

925

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.2

66.8

40.4

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

52.8

0.06

1.2

54.5

43.9

Minor 5ss

51.2

0.04

2.3

65.8

45.4

Minor BPS

46.1

-0.3

2.2

59.99

Associated Gene:

Gene:

CEP162

Ensembl Gene ID:

ENSAPLG00000011565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043852

97617827 - 97658032

40206