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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97627818_97628486_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
97627818 - 97628486
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATAAAT
5'SS Class:
major
3'SS Sequence:
ATAAATTGGATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATAAAT
Flanking Amino Acid:
REEIEKLKLEVEKLRAEAGD
Intron Amino Acid Position:
880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
78.7
29.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
51.3
0.03
1.1
46.8
44.9
Minor 5ss
29.8
-2.3
2.9
40
45.6
Minor BPS
62.5
0.47
1.7
83.82
36.1

Associated Gene:

Gene:
CEP162
Ensembl Gene ID:
ENSAPLG00000011565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022847
97617827 - 97646229
28403
ENSAPLT00000012114
97617827 - 97658032
40206
ENSAPLT00000043852
97617827 - 97658032
40206
ENSAPLT00000039731
97617827 - 97658032
40206